Silent browser walkthrough. Synthetic inventory and checks; no analysis or downloads.

00:00:00.000  QuickStart 1 · Oxford Nanopore
Run oncotracer --interactive --backend conda. Choose New analysis or Continue an existing analysis. This is a synthetic demo.

00:00:05.018  QuickStart 1 · Oxford Nanopore · new analysis
Choose New analysis to open sample setup. Continue an existing analysis is for a saved output project.

00:00:06.922  QuickStart 1 · Oxford Nanopore · preservation
Choose preservation from specimen records. Fresh is selected only as demonstration metadata here.

00:00:13.705  QuickStart 1 · Oxford Nanopore · discover inputs
Choose fastq_pass. Each barcode stays one sample, even when it contains several FASTQ batches.

00:00:28.235  QuickStart 1 · Oxford Nanopore · sample groups
Assign the example sample to Cancer. Use the type dropdown; you can also drag cards between groups.

00:00:33.742  QuickStart 1 · Oxford Nanopore · sample name
Rename barcode01 to DRR165691. The barcode still identifies the same FASTQ input.

00:00:38.009  QuickStart 1 · Oxford Nanopore · CNA settings
Keep Copy-number analysis, ichorCNA and 500 kb bins. FASTQs alone do not provide methylation calls.

00:00:46.519  QuickStart 1 · Oxford Nanopore · tools and reference
Choose the backend you installed. Keep prepared hg38 download; real downloads begin only when you start analysis.

00:00:53.016  QuickStart 1 · Oxford Nanopore · separate project
Confirm a distinct project folder. Keep optional short-variant analysis off for this CNA QuickStart.

00:00:59.767  QuickStart 1 · Oxford Nanopore · save and review
Save configuration and check. Resolve any errors before Run analysis. These displayed checks are simulated.

00:01:06.533  QuickStart 1 · Oxford Nanopore · ready for your run
In a real project, choose Run analysis after checks pass and keep its terminal open. This demo stops here; no analysis was run.